PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016494854.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 303aa    MW: 34218.2 Da    PI: 8.5342
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016494854.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-0583105123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k Fs++  L  H++ H
  XP_016494854.1  83 FECHYCSKEFSNSQALGGHQNAH 105
                     89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.94E-780110No hitNo description
Gene3DG3DSA:3.30.160.601.7E-580109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.00983110IPR007087Zinc finger, C2H2
PfamPF139126.2E-683108IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEKDISFVFH PSCNVGGNES FSKSCMEIKR HKIFGFEFDP CQKYLKGELG DRESVNSSCS  60
TILAGREKQR SNDAKDKPTE KKFECHYCSK EFSNSQALGG HQNAHRKERM RKKRLQLQET  120
KARLSYYLQA FQSTNNNIAN YHGLTSSPYF CDPNLCCDSS DQFTLYEESN ISFSSYDQDS  180
RVLPFHQESC TFTNTHGTRS RENSMAAVMK LSSLPNSASK QGCLVLVCCT RGTLTVDASS  240
HVRGGVHKSV TWLGQEKSVD AELEAQERMR KSANSSHQQL GWSTCAKAQI LRTSSYARAK  300
DWL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016494854.10.0PREDICTED: uncharacterized protein LOC107814042
TrEMBLV4TPH95e-48V4TPH9_9R
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51362130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.16e-14C2H2 family protein